A new approach to interspecific synchrony in population ecology using tail association

Standard methods for studying the association between two ecologically important variables provide only a small slice of the information content of the association, but statistical approaches are available that provide comprehensive information. In particular, available approaches can reveal tail associations, that is, accentuated or reduced associations between the more extreme values of variables. We here study the nature and causes of tail associations between phenological or population‐density variables of co‐located species, and their ecological importance. We employ a simple method of measuring tail associations which we call the partial Spearman correlation. Using multidecadal, multi‐species spatiotemporal datasets on aphid first flights and marine phytoplankton population densities, we assess the potential for tail association to illuminate two major topics of study in community ecology: the stability or instability of aggregate community measures such as total community biomass and its relationship with the synchronous or compensatory dynamics of the community''s constituent species; and the potential for fluctuations and trends in species phenology to result in trophic mismatches. We find that positively associated fluctuations in the population densities of co‐located species commonly show asymmetric tail associations; that is, it is common for two species’ densities to be more correlated when large than when small, or vice versa. Ordinary measures of association such as correlation do not take this asymmetry into account. Likewise, positively associated fluctuations in the phenology of co‐located species also commonly show asymmetric tail associations. We provide evidence that tail associations between two or more species’ population‐density or phenology time series can be inherited from mutual tail associations of these quantities with an environmental driver. We argue that our understanding of community dynamics and stability, and of phenologies of interacting species, can be meaningfully improved in future work by taking into account tail associations.     

Coordinated evolution of brain size,structure, and eye size in Trinidadian killifish

Brain size, brain architecture, and eye size vary extensively in vertebrates. However, the extent to which the evolution of these components is intricately connected remains unclear. Trinidadian killifish, Anablepsoides hartii, are found in sites that differ in the presence and absence of large predatory fish. Decreased rates of predation are associated with evolutionary shifts in brain size; males from sites without predators have evolved a relatively larger brain and eye size than males from sites with predators. Here, we evaluated the extent to which the evolution of brain size, brain structure, and eye size covary in male killifish. We utilized wild‐caught and common garden‐reared specimens to determine whether specific components of the brain have evolved in response to differences in predation and to determine if there is covariation between the evolution of brain size, brain structure, and eye size. We observed consistent shifts in brain architecture in second generation common garden reared, but not wild caught preserved fish. Male killifish from sites that lack predators exhibited a significantly larger telencephalon, optic tectum, cerebellum, and dorsal medulla when compared with fish from sites with predators. We also found positive connections between the evolution of brain structure and eye size but not between overall brain size and eye size. These results provide evidence for evolutionary covariation between the components of the brain and eye size. Such results suggest that selection, directly or indirectly, acts upon specific regions of the brain, rather than overall brain size, to enhance visual capabilities.     

Variation and covariation in infectivity,virulence and immunodepression in the host–parasite association Gammarus pulex–Pomphorhynchus laevis

Parasites often manipulate host immunity for their own benefit, either by exacerbating or suppressing the immune response and this may directly affect the expression of parasite virulence. However, genetic variation in immunodepression, which is a prerequisite to its evolution, and the relationship between immunodepression and virulence, have rarely been studied. Here, we investigated the variation among sibships of the acanthocephalan parasite, Pomphorhynchus laevis, in infecting and in immunodepressing its amphipod host, Gammarus pulex. We also assessed the covariation between infectivity, parasite-induced immune depression and host mortality (parasite virulence). We found that infectivity, the intensity of immunodepression and virulence were variable among parasite sibships. Infectivity and the level of immunodepression were not correlated across parasite sibships. Whereas infectivity was unrelated to host mortality, we found that gammarids that were exposed to the parasite sibships that immunodepressed their hosts the most survived better. This positive covariation between host survival and immunodepression suggests that gammarids exposed to the less immunodepressive parasites could suffer from damage imposed by a higher activity of the phenoloxidase.     

Interspecies transmission and host restriction of avian H5N1 influenza virus

Long-term endemicity of avian H5N1 influenza virus in poultry and continuous sporadic human infections in several countries has raised the concern of another potential pandemic influenza. Suspicion of the avian origin of the previous pandemics results in the close investigation of the mechanism of interspecies transmission. Entry and fusion is the first step for the H5N1 influenza virus to get into the host cells affecting the host ranges. Therefore receptor usage study has been a major focus for the last few years. We now know the difference of the sialic acid structures and distributions in different species, even in the different parts of the same host. Many host factors interacting with the influenza virus component proteins have been identified and their role in the host range expansion and interspecies transmission is under detailed scrutiny. Here we review current progress in the receptor usage and host factors. Supported by the National Basic Research Program of China (Grant Nos. 2005CB523001, 2005CB523002), National Key Technologies Research & Development Program (Grant 2006BAD06A01/2006BAD06A04); US National Institutes of Health (NIH) (Grant 3 U19 AI051915-05S1), the National Natural Science Foundation of China (Grant 30599434). GAO FG is a distinguished young investigator of the NSFC (Grant No. 30525010).     

Stand type is more important than red wood ant abundance for the structure of ground‐dwelling arthropod assemblages in managed boreal forests

• 1 The relationships between red wood ants (Formica rufa group) and other ground‐dwelling arthropods were studied in young managed forests stands in Eastern Finland. The main objectives were: (i) to test the influence of stand type (dominant tree species; age: sapling versus pole stage) and numbers of red wood ants on the occurrence of other ground‐dwelling arthropods and (ii) to study the occurrence of red wood ants versus other arthropods on a distance gradient from ant mounds. We used pitfall traps set in 5–14‐year‐old sapling stands and 30–45‐year‐old pole‐stage stands of Scots pine (Pinus sylvestris L.) and birch (Betula spp.) forests.
• 2 Pitfall trap catches of red wood ants did not vary significantly between the forest stand types, although some groups of other arthropods showed clear responses to stand type (e.g. catches of other Formicinae and Gnaphosidae were higher in sapling stands than in pole‐stage stands). The number of red wood ants clearly explained less of the variation in assemblages of other ground‐dwelling arthropods than the forest stand type.
• 3 Red wood ant numbers decreased significantly with distance from the mounds, but the other ground‐dwelling arthropods were insensitive to this gradient or even showed a preference for proximity to ant mounds and high ant activity.
• 4 The results obtained in the present study suggest that wood ants do not have strong effects on several other ground‐dwelling arthropod groups in young managed forests other than in the immediate vicinity of their mounds.

     

On being a (modern) scientist: risks of public engagement in the UK interspecies embryo debate

In 2006, a small group of UK academic scientists made headlines when they proposed the creation of interspecies embryos – mixing human and animal genetic material. A public campaign was fought to mobilize support for the research. Drawing on interviews with the key scientists involved, this paper argues that engaging the public through communicating their ideas via the media can result in tensions between the necessity of, and inherent dangers in, scientists campaigning on controversial issues. Some scientists believed that communicating science had damaged their professional standing in the eyes of their peers, who, in turn, policed the boundaries around what they believed constituted a “good” scientist. Tensions between promoting “science” versus promotion of the “scientist”; engaging the public versus publishing peer-reviewed articles and winning grants; and building expectations versus overhyping the science reveal the difficult choices scientists in the modern world have to make over the potential gains and risks of communicating science. We conclude that although scientists' participation in public debates is often encouraged, the rewards of such engagement remain. Moreover, this participation can detrimentally affect scientists' careers.     

Identification of species‐specific genes from Leucaena leucocephala using interspecies suppression subtractive hybridisation

Leucaena leucocephala (leucaena) is a tropical tree‐legume, known for its high level of tolerance to various stress conditions including drought and diseases. We hypothesised that leucaena contains a specific set of genes for tolerance to various abiotic and biotic stresses, which may be either absent or not expressed in other legumes that are susceptible to these stress conditions. Interspecies suppression subtractive hybridisation (iSSH) was used to identify some leucaena‐specific genes using cDNAs from leucaena and Acacia confusa (acacia) as the tester and driver, respectively. Ninety‐six leucaena genes showing homologies to various plant genes with known functions and 46 other genes encoding hypothetical proteins (hyps) were identified. Twenty‐two genes encoded various stress‐related proteins including chitinase, PR‐10 protein, type 2 metallothionein, thaumatin‐like protein, germin‐like protein (GLP), molybdenum cofactor sulfurase (MCSU), aldehyde dehydrogenase, cysteine proteinase and Kunitz trypsin inhibitor. Conserved domain (CD) and position‐specific iterative (PSI)‐BLAST analyses predicted the possible functions of 15 hyps. The possible functions of the remaining hyps were predicted on the basis of various linear motifs. Six stress‐related genes and 22 hyps were identified that expressed at higher levels under drought conditions in leucaena. The stress‐related genes of leucaena identified through iSSH provide a foundation for future studies of molecular bases of stress tolerance in leucaena. These genes may also serve as a useful source of stress‐tolerant genes for crop improvement in the future.     

Is the Setal Patch on the Chelae of Hemigrapsus takanoi and Hemigrapsus sinensis (Crustacea,Brachyura, Varunidae) Advantageous in Fighting and Mating?

Many animals have unique morphological characters that function in social behavior. Sexual selection can affect the expression of such traits in males and females, leading to sexual dimorphism. We investigated the social function of setal patches on the chelae of two species of varunid crabs, one in which males, but not females, have setal patches (Hemigrapsus takanoi), and one in which both sexes have setal patches (Hemigrapsus sinensis). We experimentally removed setal patches and compared fighting and mating behavior of individuals with and without setal patches. In H. sinensis, males with setal patches removed were inferior fighters compared to intact males. In male H. takanoi and female H. sinensis, setal removal did not influence the outcome of fights. In mating, males lacking setal patches had a similar ability to copulate with females as intact males in both species. However, male H. takanoi with their setae removed tended to take more time to initiate copulation than did intact males. When females were given the opportunity to choose intact males or males without setal patches, females of H. takanoi did not discriminate between the two. Female H. sinensis, however, copulated with intact males more frequently compared to males lacking setal patches. Male H. sinensis showed no preferences for the presence of setal patches or the body size of females. Thus, our results indicate that setal patches have a social function in male H. takanoi and male H. sinensis, but not in female H. sinensis, suggesting that the setal patches of male crabs are a sexually selected trait in both species. However, the social function of male setal patches was more prominent in the species in which both sexes possess setal patches than in the species in which only males bear setal patches.     

烟草远缘杂种合子中父本特异表达基因EB30的克隆与分析

已知烟草远缘杂种的合子中EB30基因(EST序列号EB426694)的表达具有父本特异性。参考NCBI的EST序列设计引物,克隆得到该基因的CDS序列,并对其编码的蛋白进行生物信息学分析。使用染色体步移和hi TAIR-PCR技术获取EB30基因的5'侧翼序列(启动子和5'UTR)。构建由该基因5'侧翼序列驱动的EB30-EGFP融合蛋白表达载体并转化烟草。结果表明,EB30蛋白由211个氨基酸组成,蛋白分子量为22.616 2 k D,等电点p I为5.63。该蛋白具有亲水性,可能定位于线粒体中。烟草EB30蛋白与同属茄科的番茄和马铃薯的蛋白序列相似度最高,约为73%。不同物种的同源蛋白的N端和C端都具有一段较为保守的序列区段。观察转基因植株合子和二胞原胚能检测到较强荧光,证实所获EB30基因的5'侧翼序列在早期胚胎发生时期具有启动子活性。